miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|71712600|gb|DR943237.1|DR943237 TAAACACCACACCTTCTCAATTCCTCTTCTCCATCTTCTCTCTCTGATTCTCCAGTACCCTAAACTCTCTTCTTCTCAAA
AAATTAACAATGGCTTCAATGACTACTGCTTTCACTTCTCATCTTTCTTCCAAAATCAAAACCCCTTTCTTAGATAACCA
ATCATCTTTCCATGTCACTCCATCTCGCATCCAACTCACTCGTTCATCTTCCCCAAACACTCACATCACCATGTCTTCAT
CATCATCATCATCATCTTCATCTTATGATCTATCTTCCTTCAAATTTGAACCAATTAAGGAATCCATTGTATCACGTGAG
ATGACTCGCAGATACATGATGGATATGATTACATATGCTGACACTGATGTTGTTGTTGTTGGAGCAGGTTCAGCAGGTCT
TTCTTGTGCTTATGAAATGAGCAAAAACCCTAACATCAACATCGCTATTATCGAACAATCTGTCAGTCCTGGTGGTGGTG
CTTGGTTAGGTGGTCAGCTTTTTTCTGCCATGGTTGTTCGCAAACCTGCTCACATCTTCCTTGATGAACTCGGTGTTGAA
TACGATGAACAAGACACCTATGTTGTTATCAAGCACGCTGCCTTGTTTACATCCACAATCATGTCTAAGCTTTTGGCTAA
ACCAAATGTGAAACTTTTTAATGCTGTTGCTGCTGAGGATTTGATCGTGAAAGAAGGTAAAGTTGCTGGGGTTGTCACAA
ATTGGGCTTTGGTTTCTATGAATCATGATACACAATCATGTATGGATCCAAATGTAATGGAAGCTAAGATTGTTGTCAGT
TCTTGTGGCCATGATGGTCCTTTTGGTGCTACTGGTGTGAAGAGGCTGAAGAGCATTGGAATGATTGATTCTGTTC




Most similar to sp|O23787|THI4_CITSI

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|O23787|THI4_CITSI Thiazole biosynthetic enzyme, chloroplastic
           OS=Citrus sinensis GN=THI1 PE=2 SV=1
          Length = 356

 Score =  368 bits (945), Expect = e-101
 Identities = 197/264 (74%), Positives = 208/264 (78%), Gaps = 2/264 (0%)
 Frame = +3

Query: 90  MASM-TTAFTSHLSSKIKTPFLDNQSSFHVTPSRIQLTRXXXXXXXXXXXXXXXXXXXXX 266
           MA+M +TAF   +SS     F    SSFH  P    L R                     
Sbjct: 1   MAAMASTAFAPSVSSTTNKLF---DSSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPP 57

Query: 267 XXXX-FKFEPIKESIVSREMTRRYMMDMITYADTDXXXXGAGSAGLSCAYEMSKNPNINI 443
                FKF+PIKESIVSREMTRRYM DMITYADTD    GAGSAGLSCAYE+SKNPNI I
Sbjct: 58  YDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQI 117

Query: 444 AIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGVEYDEQDTYVVIKHAALFTSTIM 623
           AIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELG++YDEQD YVVIKHAALFTSTIM
Sbjct: 118 AIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIM 177

Query: 624 SKLLAKPNVKLFNAVAAEDLIVKEGKVAGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSS 803
           SKLLA+PNVKLFNAVAAEDLIVK G+V GVVTNWALVSMNHDTQSCMDPNVMEAK+VVSS
Sbjct: 178 SKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSS 237

Query: 804 CGHDGPFGATGVKRLKSIGMIDSV 875
           CGHDGPFGATGVKRLKSIGMI+ V
Sbjct: 238 CGHDGPFGATGVKRLKSIGMIEEV 261